{ "_id": "6a63acd0a0832cf944e3d634", "Package": "whep", "Title": "Processing Agro-Environmental Data", "Version": "0.3.0.9000", "Authors@R": "c(\nperson(\"Catalin\", \"Covaci\", , \"catalin.covaci@csic.es\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0009-0005-2186-5972\")),\nperson(\"Eduardo\", \"Aguilera\", , \"eduardo.aguilera@csic.es\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-4382-124X\")),\nperson(\"Alice\", \"Beckmann\", , \"alice.beckmann@cchs.csic.es\", role = c(\"aut\"), comment = c(ORCID = \"0009-0009-6840-0258\")),\nperson(\"Juan\", \"Infante\", , \"jinfama@ugr.es\", role = c(\"aut\"), comment = c(ORCID = \"0000-0003-1446-7181\")),\nperson(\"Justin\", \"Morgan\", , \"justin.morgan@cchs.csic.es\", role = c(\"aut\"), comment = c(ORCID = \"0009-0003-7022-4288\")),\nperson(\"João\", \"Serra\", , \"jserra@agro.au.dk\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-3561-5350\")),\nperson(\"European Research Council\", role = c(\"fnd\"))\n)", "Description": "A set of tools for processing and analyzing data developed\nin the context of the \"Who Has Eaten the Planet\" (WHEP)\nproject, funded by the European Research Council (ERC). For\nmore details on multi-regional input–output model \"Food and\nAgriculture Biomass Input–Output\" (FABIO) see Bruckner et al.\n(2019) .", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "URL": "https://eduaguilera.github.io/whep/,\nhttps://github.com/eduaguilera/whep", "BugReports": "https://github.com/eduaguilera/whep/issues", "LazyData": "true", "LazyDataCompression": "xz", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nlibx11-dev", "Repository": "https://eduaguilera.r-universe.dev", "Date/Publication": "2026-07-24 14:57:26 UTC", "RemoteUrl": "https://github.com/eduaguilera/whep", "RemoteRef": "HEAD", "RemoteSha": "0800c15ae40109d55f1bba6afd00574967517254", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-24 18:12:42 UTC", "User": "root" }, "Author": "Catalin Covaci [aut, cre] (ORCID:\n),\nEduardo Aguilera [aut, cph] 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"Indirect N2O emission factors.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "parameter", "value", "description" ], "rows": 4, "table": true, "tojson": true }, { "name": "ipcc_2006_enteric_ef", "title": "IPCC 2006 Tier 1 enteric emission factors.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "region", "category", "ef_kg_head_yr" ], "rows": 22, "table": true, "tojson": true }, { "name": "ipcc_2006_manure_ef", "title": "IPCC 2006 Tier 1 manure emission factors.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "region", "category", "ef_kg_head_yr", "temp_zone" ], "rows": 13, "table": true, "tojson": true }, { "name": "ipcc_2006_mcf_temp", "title": "IPCC 2006 MCF by temperature.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "system", "temp_c", "mcf_percent" ], "rows": 16, "table": true, "tojson": true }, { "name": "ipcc_2019_bo", 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"ipcc_2019_manure_ch4_ef_cattle", "title": "IPCC 2019 manure CH4 EF for cattle.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "region", "category", "climate", "ef_kg_head_yr" ], "rows": 26, "table": true, "tojson": true }, { "name": "ipcc_2019_manure_ch4_ef_other", "title": "IPCC 2019 manure CH4 EF for non-cattle.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "category", "climate", "ef_kg_head_yr" ], "rows": 10, "table": true, "tojson": true }, { "name": "ipcc_2019_mcf_manure", "title": "IPCC 2019 MCF for manure management.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "system", "climate_zone", "mcf_percent" ], "rows": 47, "table": true, "tojson": true }, { "name": "ipcc_2019_n_excretion", "title": "IPCC 2019 nitrogen excretion rates.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "region", "category", "nex_kg_n_head_yr" ], "rows": 30, "table": true, "tojson": true }, { "name": "ipcc_2019_n2o_ef_direct", "title": "IPCC 2019 direct N2O emission factors.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "system", "ef_kg_n2o_n_per_kg_n" ], "rows": 18, "table": true, "tojson": true }, { "name": "ipcc_2019_ym", "title": "IPCC 2019 Ym values (Table 10.12).", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "category", "feed_situation", "ym_percent", "ym_uncertainty" ], "rows": 9, "table": true, "tojson": true }, { "name": "ipcc_tier2_bo_values", "title": "Tier 2 Bo values.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "category", "bo_m3_kg_vs" ], "rows": 12, "table": true, "tojson": true }, { "name": "ipcc_tier2_energy_coefs", "title": "Tier 2 energy coefficients.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "category", "subcategory", "cfi_mj_day_kg075", "ca_pasture", "ca_feedlot", "cp", "cw", "energy_content_gain_mj_kg" ], "rows": 6, "table": true, "tojson": true }, { "name": "ipcc_tier2_manure_ash", "title": "Tier 2 manure ash content.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "category", "ash_percent" ], "rows": 9, "table": true, "tojson": true }, { "name": "ipcc_tier2_n_retention", "title": "Tier 2 nitrogen retention fractions.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "category", "n_retention_frac" ], "rows": 10, "table": true, "tojson": true }, { "name": "ipcc_tier2_ym_values", "title": "Tier 2 Ym values.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "category", "feed_situation", "ym_percent" ], "rows": 16, "table": true, "tojson": true }, { "name": "items_cbs", "title": "Commodity balance sheet items", "object": "items_cbs", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "item_cbs_code", "item_cbs_name", "item_type" ], "rows": 170, "table": true, "tojson": true }, { "name": "items_full", "title": "Full CBS item table", "object": "items_full", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "item_cbs", "item_cbs_code", "comm_code", "proc_code", "proc", "unit", "group", "feedtype_graniv", "feedtype_grazers", "comm_group", "Cat_1", "Name_biomass", "dbMFA_items", "FEDNA", "default_destiny" ], "rows": 199, "table": true, "tojson": true }, { "name": "items_prim", "title": "Primary production items linked to CBS", "object": "items_prim", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "item_prod", "item_prod_code", "item_cbs", "item_cbs_code", "Farm_class", "Cat_Labour", "Cat_FAO1", "group" ], "rows": 291, "table": true, "tojson": true }, { "name": "items_prod", "title": "Primary production items", "object": "items_prod", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "item_prod_code", "item_prod_name", "item_type" ], "rows": 304, "table": true, "tojson": true }, { "name": "items_prod_full", "title": "Full production item table", "object": "items_prod_full", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "item_prod", "item_prod_code", "item_cbs", "item_cbs_code", "group", "live_anim", "live_anim_code", "Cat_Krausmann", "Name_biomass", "Name_Eurostat", "Name", "Cat_Labour", "Cat_FAO1", "Cat_Origin", "Cat_Use", "Order", "Categ", "Farm_class", "c3_c4", "ann_per_nfx", "Cat_1", "Cat_2", "Cat_3", "Cat_4", "Herb_Woody", "Crop_irrig", "Cat_Org", "Cat_Ymax", "Cat_Ymax_leg" ], "rows": 310, "table": true, "tojson": true }, { "name": "lassaletta_grassland_share", "title": "Grassland share of synthetic nitrogen by country and year", "object": "lassaletta_grassland_share", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Country", "year", "grass_share" ], "rows": 6909, "table": true, "tojson": true }, { "name": "liv_lu_coefs", "title": "Livestock unit coefficients", "object": "liv_lu_coefs", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Animal_class", "LU_head" ], "rows": 16, "table": true, "tojson": true }, { "name": "livestock_constants", "title": "Livestock physical constants.", "object": "livestock_coefs", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "livestock_production_defaults", "title": "Default production parameters.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "category", "fat_percent", "protein_percent", "lactose_percent", "weight_gain_kg_day", "work_hours_day", "pregnant_fraction" ], "rows": 10, "table": true, "tojson": true }, { "name": "max_intake_share", "title": "Maximum intake shares.", "object": "max_intake_share", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "livestock_category", "var", "var_value", "max_intake_share" ], "rows": 28, "table": true, "tojson": true }, { "name": "mueller_synthetic_n", "title": "Synthetic nitrogen application rates by crop and country", "object": "mueller_synthetic_n", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "proc_code", "crop_process", "crop_original", "unit", "iso3c", "rate_value" ], "rows": 5043, "table": true, "tojson": true }, { "name": "polities", "title": "Polities", "object": "polities", "class": [ "sf", "data.frame" ], "fields": [ "polity_code", "polity_name", "start_year", "end_year", "polity_type", "iso3_code", "cow_code", "continent", "wiki_status", "last_ingest", "polygon_source", "polygon_feature_id", "polygon_feature_year", "polygon_status", "polygon_area_km2", "predecessor", "successor", "geom", "iso3c", "has_geometry" ], "rows": 603, "table": false, "tojson": true }, { "name": "polities_cats", "title": "Polity categories and regional classifications", "object": "polities_cats", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "polity_code", "polity_name", "V1", "code", "iso3c", "FAOSTAT_name", "EU27", "name", "eia", "iea", "water_code", "water_area", "baci", "fish", "region_code", "cbs", "fabio_code", "ADB_Region", "region", "uISO3c", "Lassaletta", "region_krausmann", "region_HANPP", "region_krausmann2", "region_UN_sub", "region_UN", "region_ILO1", "region_ILO2", "region_ILO3", "region_IEA", "region_IPCC", "region_labour", "region_labour_agg", "region_labour_mech", "region_test", "polity_area_code", "reporting_polity_code", "reporting_polity_name", "reporting_polity_has_geometry" ], "rows": 198, "table": true, "tojson": true }, { "name": "polity_area_crosswalk", "title": "FAOSTAT/FABIO area-to-polity crosswalk", "object": "polity_area_crosswalk", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "area_code", "area_name", "area_iso3c", "reporting_polity_code", "reporting_polity_name", "cbs", "fabio_code", "region", "polity_area_code", "polity_code", "polity_name", "polity_start_year", "polity_end_year", "polity_type", "iso3_code", "cow_code", "continent", "wiki_status", "polygon_status", "has_geometry", "mapping_status", "mapping_note" ], "rows": 550, "table": true, "tojson": true }, { "name": "primary_double", "title": "Items with double-counting in production statistics", "object": "primary_double", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "Item_area", "item_prod", "item_prod_code", "Multi_type" ], "rows": 18, "table": true, "tojson": true }, { "name": "regional_mms_distribution", "title": "Regional MMS distribution.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "region", "species", "mms_type", "fraction" ], "rows": 33, "table": true, "tojson": true }, { "name": "regions_full", "title": "Full polity and region reference table", "object": "regions_full", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "polity_code", "polity_name", "V1", "code", "iso3c", "FAOSTAT_name", "EU27", "name", "eia", "iea", "water_code", "water_area", "baci", "fish", "region_code", "cbs", "fabio_code", "ADB_Region", "region", "uISO3c", "Lassaletta", "region_krausmann", "region_HANPP", "region_krausmann2", "region_UN_sub", "region_UN", "region_ILO1", "region_ILO2", "region_ILO3", "region_IEA", "region_IPCC", "region_labour", "region_labour_agg", "region_labour_mech", "region_test", "polity_area_code", "reporting_polity_code", "reporting_polity_name", "reporting_polity_has_geometry" ], "rows": 272, "table": true, "tojson": true }, { "name": "smil_2001_synthetic_n_global", "title": "Smil (2001) global synthetic nitrogen production, 1913-2000", "object": "smil_2001_synthetic_n_global", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "year", "global_kt_n" ], "rows": 18, "table": true, "tojson": true }, { "name": "temperature_adjustment", "title": "Temperature adjustment factors for NEm.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "temp_range", "temp_min", "temp_max", "adjustment_factor" ], "rows": 3, "table": true, "tojson": true }, { "name": "uncertainty_ranges", "title": "Uncertainty ranges for emission parameters.", "object": "livestock_coefs", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "parameter", "lower_mult", "upper_mult", "distribution" ], "rows": 5, "table": true, "tojson": true }, { "name": "whep_inputs", "title": "External inputs", "object": "whep_inputs", "class": [ "spec_tbl_df", "tbl_df", "tbl", "data.frame" ], "fields": [ "alias", "board_url", "version" ], "rows": 64, "table": true, "tojson": true } ], "_help": [ { "page": "add_area_code", "title": "Get area codes from area names", "topics": [ "add_area_code" ] }, { "page": "add_area_name", "title": "Get area names from area codes", "topics": [ "add_area_name" ] }, { "page": "add_footprint_product_stage", "title": "Add a final-demand product-area stage to footprints.", "topics": [ "add_footprint_product_stage" ] }, { "page": "add_item_cbs_code", "title": "Get commodity balance sheet item codes from item names", "topics": [ "add_item_cbs_code" ] }, { "page": "add_item_cbs_name", "title": "Get commodity balance sheet item names from item codes", "topics": [ "add_item_cbs_name" ] }, { "page": "add_item_prod_code", "title": "Get production item codes from item names", "topics": [ "add_item_prod_code" ] }, { "page": "add_item_prod_name", "title": "Get production item names from item codes", "topics": [ "add_item_prod_name" ] }, { "page": "add_polity_code", "title": "Add WHEP polity codes to a table", "topics": [ "add_polity_code" ] }, { "page": "aggregate_grass_to_polity", "title": "Aggregate gridded grass availability to polity totals.", "topics": [ "aggregate_grass_to_polity" ] }, { "page": "align_extension", "title": "Align an extension table to input-output sector labels.", "topics": [ "align_extension" ] }, { "page": "allocate_grazing_to_products", "title": "Allocate grazing land forward to livestock products.", "topics": [ "allocate_grazing_to_products" ] }, { "page": "allocate_manure_to_land", "title": "Allocate field-available manure to cropland and grassland by crop.", "topics": [ "allocate_manure_to_land" ] }, { "page": "allocate_manure_transport", "title": "Spill surplus manure to neighbouring cells with spare capacity.", "topics": [ "allocate_manure_transport" ] }, { "page": "animals_codes", "title": "Animal codes and classifications", "topics": [ "animals_codes" ] }, { "page": "apply_management_losses", "title": "Apply IPCC manure-management losses to the collected manure streams.", "topics": [ "apply_management_losses" ] }, { "page": "assert_footprint_invariants", "title": "Assert that footprint conservation invariants hold.", "topics": [ "assert_footprint_invariants" ] }, { "page": "attach_provenance", "title": "Attach a provenance record to a result.", "topics": [ "attach_provenance" ] }, { "page": "attach_scope", "title": "Attach a scope record to a result.", "topics": [ "attach_scope" ] }, { "page": "attribute_fallow_to_crops", "title": "Attribute reported fallow land to crops.", "topics": [ "attribute_fallow_to_crops" ] }, { "page": "balance_io_flows", "title": "Balance input-output flows so the footprint conserves.", "topics": [ "balance_io_flows" ] }, { "page": "balance_ras", "title": "Balance a matrix to target margins by RAS.", "topics": [ "balance_ras" ] }, { "page": "biomass_coefs", "title": "Biomass coefficients for crops and livestock products", "topics": [ "biomass_coefs" ] }, { "page": "build_cbs_prices", "title": "Build CBS item prices", "topics": [ "build_cbs_prices" ] }, { "page": "build_commodity_balances", "title": "Build commodity balance sheets", "topics": [ "build_commodity_balances" ] }, { "page": "build_constant_territory_series", "title": "Build a constant-territory time series for a reference year's boundaries", "topics": [ "build_constant_territory_series" ] }, { "page": "build_crop_land_extension", "title": "Build per-crop physical cropland extension.", "topics": [ "build_crop_land_extension" ] }, { "page": "build_crop_soil_n2o_extension", "title": "Build the crop/soil N2O extension.", "topics": [ "build_crop_soil_n2o_extension" ] }, { "page": "build_cropgrids_land_extension", "title": "Build a per-crop physical land extension from CROPGRIDS.", "topics": [ "build_cropgrids_land_extension" ] }, { "page": "build_detailed_trade", "title": "Build detailed bilateral trade matrix", "topics": [ "build_detailed_trade" ] }, { "page": "build_energy_co2_extension", "title": "Build the livestock energy-use CO2 footprint extension (meat only).", "topics": [ "build_energy_co2_extension" ] }, { "page": "build_fao_arable_fallow_extension", "title": "Build a per-crop physical land extension with FAO fallow-inclusive arable land.", "topics": [ "build_fao_arable_fallow_extension" ] }, { "page": "build_feed_demand", "title": "Build livestock feed demand.", "topics": [ "build_feed_demand" ] }, { "page": "build_feed_intake_local", "title": "Build local (per-cell) feed intake, chunked by year.", "topics": [ "build_feed_intake_local" ] }, { "page": "build_footprint", "title": "Compute a footprint end-to-end from an extension table.", "topics": [ "build_footprint" ] }, { "page": "build_grass_availability", "title": "Build grazable grass availability.", "topics": [ "build_grass_availability" ] }, { "page": "build_grass_availability_lpjml", "title": "Build grazable grass availability from an LPJmL run.", "topics": [ "build_grass_availability_lpjml" ] }, { "page": "build_grassland_land_extension", "title": "Build the native grassland land extension.", "topics": [ "build_grassland_land_extension" ] }, { "page": "build_grazing_feed_footprint", "title": "Build a grazing-land footprint by forward feed-allocation.", "topics": [ "build_grazing_feed_footprint" ] }, { "page": "build_gridded_landuse", "title": "Build gridded landuse dataset", "topics": [ "build_gridded_landuse" ] }, { "page": "build_gridded_livestock", "title": "Build gridded livestock dataset", "topics": [ "build_gridded_livestock" ] }, { "page": "build_hayr_land_extension", "title": "Build a hectare-year (land-occupation) crop land extension.", "topics": [ "build_hayr_land_extension" ] }, { "page": "build_io_model", "title": "Build multi-regional input-output model.", "topics": [ "build_io_model" ] }, { "page": "build_land_balance_footprint", "title": "Build a consumption land footprint by physical trade balance.", "topics": [ "build_land_balance_footprint" ] }, { "page": "build_livestock_ghg_extension", "title": "Build the livestock greenhouse-gas emissions extension.", "topics": [ "build_livestock_ghg_extension" ] }, { "page": "build_livestock_nutrient_flows", "title": "Build livestock nutrient flows from realised feed intake.", "topics": [ "build_livestock_nutrient_flows" ] }, { "page": "build_primary_prices", "title": "Build primary item prices", "topics": [ "build_primary_prices" ] }, { "page": "build_primary_production", "title": "Build primary production dataset", "topics": [ "build_primary_production" ] }, { "page": "build_processing_coefs", "title": "Build processing coefficients", "topics": [ "build_processing_coefs" ] }, { "page": "build_residue_feed_avail", "title": "Build residue feed availability for feed allocation.", "topics": [ "build_residue_feed_avail" ] }, { "page": "build_supply_use", "title": "Supply and use tables", "topics": [ "build_supply_use" ] }, { "page": "build_trade_prices", "title": "Build global trade prices", "topics": [ "build_trade_prices" ] }, { "page": "calculate_bnf", "title": "Estimate total biological nitrogen fixation.", "topics": [ "calculate_bnf" ] }, { "page": "calculate_cohorts_systems", "title": "Calculate cohort and production system distribution.", "topics": [ "calculate_cohorts_systems" ] }, { "page": "calculate_crop_bnf", "title": "Estimate symbiotic biological nitrogen fixation by crop legumes.", "topics": [ "calculate_crop_bnf" ] }, { "page": "calculate_crop_npp", "title": "Estimate total crop net primary production.", "topics": [ "calculate_crop_npp" ] }, { "page": "calculate_crop_npp_components", "title": "Estimate cropland NPP components including weeds.", "topics": [ "calculate_crop_npp_components" ] }, { "page": "calculate_crop_residues", "title": "Estimate crop above-ground residue biomass.", "topics": [ "calculate_crop_residues" ] }, { "page": "calculate_crop_roots", "title": "Estimate crop below-ground (root) biomass.", "topics": [ "calculate_crop_roots" ] }, { "page": "calculate_enteric_ch4", "title": "Calculate enteric methane emissions.", "topics": [ "calculate_enteric_ch4" ] }, { "page": "calculate_livestock_emissions", "title": "Calculate all livestock emissions.", "topics": [ "calculate_livestock_emissions" ] }, { "page": "calculate_lmdi", "title": "Calculate LMDI decomposition.", "topics": [ "calculate_lmdi" ] }, { "page": "calculate_manure_emissions", "title": "Calculate manure emissions (CH4 + N2O).", "topics": [ "calculate_manure_emissions" ] }, { "page": "calculate_nonsymbiotic_bnf", "title": "Estimate non-symbiotic biological nitrogen fixation.", "topics": [ "calculate_nonsymbiotic_bnf" ] }, { "page": "calculate_npp_carbon_nitrogen", "title": "Partition crop and weed NPP into dry matter, carbon and nitrogen.", "topics": [ "calculate_npp_carbon_nitrogen" ] }, { "page": "calculate_nue_crops", "title": "N soil inputs and Nitrogen Use Efficiency (NUE) for crop", "topics": [ "calculate_nue_crops" ] }, { "page": "calculate_nue_livestock", "title": "NUE for Livestock", "topics": [ "calculate_nue_livestock" ] }, { "page": "calculate_potential_npp", "title": "Estimate potential net primary production.", "topics": [ "calculate_potential_npp" ] }, { "page": "calculate_residue_destinies", "title": "Estimate the destinies of crop residues.", "topics": [ "calculate_residue_destinies" ] }, { "page": "calculate_system_nue", "title": "System NUE", "topics": [ "calculate_system_nue" ] }, { "page": "calculate_uncertainty_bounds", "title": "Calculate uncertainty bounds for livestock emissions.", "topics": [ "calculate_uncertainty_bounds" ] }, { "page": "calculate_weed_bnf", "title": "Estimate symbiotic biological nitrogen fixation by weeds and cover crops.", "topics": [ "calculate_weed_bnf" ] }, { "page": "cb_processing", "title": "Commodity balance sheet processing fractions", "topics": [ "cb_processing" ] }, { "page": "cbs_trade_codes", "title": "CBS to trade item code mapping", "topics": [ "cbs_trade_codes" ] }, { "page": "cft_mapping", "title": "FAOSTAT crop to LPJmL crop functional type (CFT) mapping", "topics": [ "cft_mapping" ] }, { "page": "check_footprint_conservation", "title": "Check footprint conservation against direct extensions.", "topics": [ "check_footprint_conservation" ] }, { "page": "check_series_jumps", "title": "Flag implausible year-on-year jumps in a time series.", "topics": [ "check_series_jumps" ] }, { "page": "check_supply_use_balance", "title": "Check the commodity balance sheet supply-use identity.", "topics": [ "check_supply_use_balance" ] }, { "page": "climate_mcf", "title": "Climate-zone MCF values.", "topics": [ "climate_mcf" ] }, { "page": "combine_cov", "title": "Combine independent coefficient-of-variation components.", "topics": [ "combine_cov" ] }, { "page": "compare_footprint_methods", "title": "Compare two footprint estimates.", "topics": [ "compare_footprint_methods" ] }, { "page": "compute_footprint", "title": "Compute environmental footprints.", "topics": [ "compute_footprint" ] }, { "page": "compute_footprint_balance", "title": "Compute land footprints by physical trade balance.", "topics": [ "compute_footprint_balance" ] }, { "page": "compute_footprint_paths", "title": "Compute first-use footprint paths.", "topics": [ "compute_footprint_paths" ] }, { "page": "compute_fp_product_paths", "title": "Compute final-product footprint paths.", "topics": [ "compute_fp_product_paths" ] }, { "page": "compute_leontief_inverse", "title": "Compute Leontief inverse.", "topics": [ "compute_leontief_inverse" ] }, { "page": "consolidate_sources", "title": "Consolidate a multi-source panel to one winning row per cell.", "topics": [ "consolidate_sources" ] }, { "page": "conv_bouwman", "title": "Bouwman feed conversion ratios.", "topics": [ "conv_bouwman" ] }, { "page": "conv_krausmann", "title": "Krausmann per head feed intake.", "topics": [ "conv_krausmann" ] }, { "page": "create_n_nat_destiny", "title": "GRAFS Nitrogen (N) flows at Spain national level", "topics": [ "create_n_nat_destiny" ] }, { "page": "create_n_production", "title": "N production for Spain", "topics": [ "create_n_production" ] }, { "page": "create_n_prov_destiny", "title": "GRAFS Nitrogen (N) flows", "topics": [ "create_n_prov_destiny" ] }, { "page": "create_n_soil_inputs", "title": "Nitrogen (N) soil inputs for Spain", "topics": [ "create_n_soil_inputs" ] }, { "page": "crops_eurostat", "title": "Eurostat crop classification codes", "topics": [ "crops_eurostat" ] }, { "page": "crops_manure_n", "title": "Manure nitrogen application by crop and country", "topics": [ "crops_manure_n" ] }, { "page": "decompose_weighted_ratio", "title": "Decompose a weighted aggregate ratio.", "topics": [ "decompose_weighted_ratio" ] }, { "page": "estimate_energy_demand", "title": "Estimate energy demand (Gross Energy) - Tier 2", "topics": [ "estimate_energy_demand" ] }, { "page": "estimate_n_excretion", "title": "Estimate livestock nitrogen, carbon and volatile-solids excretion.", "topics": [ "estimate_n_excretion" ] }, { "page": "expand_trade_sources", "title": "Trade data sources", "topics": [ "expand_trade_sources" ] }, { "page": "feed_characteristics", "title": "Feed characteristics by diet quality.", "topics": [ "feed_characteristics" ] }, { "page": "feed_taxonomy", "title": "Feed taxonomy.", "topics": [ "feed_taxonomy" ] }, { "page": "fill_linear", "title": "Fill gaps by linear interpolation, or carrying forward or backward.", "topics": [ "fill_linear" ] }, { "page": "fill_proxy_growth", "title": "Fill gaps using growth rates from proxy variables", "topics": [ "fill_proxy_growth" ] }, { "page": "fill_sum", "title": "Fill gaps summing the previous value of a variable to the value of another variable.", "topics": [ "fill_sum" ] }, { "page": "footprint_scope", "title": "Describe the scope of a footprint result.", "topics": [ "footprint_scope" ] }, { "page": "footprint_sensitivity", "title": "Local sensitivity of a footprint to each extension.", "topics": [ "footprint_sensitivity" ] }, { "page": "get_arable_permanent_land", "title": "Physical arable and permanent-crop land base (fallow-inclusive).", "topics": [ "get_arable_permanent_land" ] }, { "page": "get_bilateral_trade", "title": "Bilateral trade data", "topics": [ "get_bilateral_trade" ] }, { "page": "get_crop_land_extension", "title": "Get the per-crop physical cropland extension from spatialization inputs.", "topics": [ "get_crop_land_extension" ] }, { "page": "get_faostat_data", "title": "Scrape activity data from FAOSTAT and post-process it", "topics": [ "get_faostat_data" ] }, { "page": "get_feed_intake", "title": "Livestock feed intake", "topics": [ "get_feed_intake" ] }, { "page": "get_polity_geometries", "title": "Get WHEP polity geometries", "topics": [ "get_polity_geometries" ] }, { "page": "get_primary_production", "title": "Primary items production", "topics": [ "get_primary_production" ] }, { "page": "get_primary_residues", "title": "Crop residue items", "topics": [ "get_primary_residues" ] }, { "page": "get_processing_coefs", "title": "Processed products share factors", "topics": [ "get_processing_coefs" ] }, { "page": "get_provenance", "title": "Retrieve a result's provenance record.", "topics": [ "get_provenance" ] }, { "page": "get_scope", "title": "Retrieve a result's scope record.", "topics": [ "get_scope" ] }, { "page": "get_wide_cbs", "title": "Commodity balance sheet data.", "topics": [ "get_wide_cbs" ] }, { "page": "gleam_animal_weights", "title": "GLEAM animal weights.", "topics": [ "gleam_animal_weights" ] }, { "page": "gleam_crop_residue_nitrogen", "title": "Nitrogen parameters for crop residues of feed materials.", "topics": [ "gleam_crop_residue_nitrogen" ] }, { "page": "gleam_crop_residue_params", "title": "GLEAM crop residue parameters.", "topics": [ "gleam_crop_residue_params" ] }, { "page": "gleam_dressing_percentages", "title": "GLEAM dressing percentages.", "topics": [ "gleam_dressing_percentages" ] }, { "page": "gleam_energy_use_ef", "title": "Energy use emission factors for livestock production.", "topics": [ "gleam_energy_use_ef" ] }, { "page": "gleam_enteric_params", "title": "GLEAM enteric fermentation parameters.", "topics": [ "gleam_enteric_params" ] }, { "page": "gleam_feed_categories", "title": "GLEAM feed categories.", "topics": [ "gleam_feed_categories" ] }, { "page": "gleam_feed_composition", "title": "GLEAM feed use efficiency.", "topics": [ "gleam_feed_composition" ] }, { "page": "gleam_feed_conversion_ratios", "title": "GLEAM feed conversion ratios for monogastrics.", "topics": [ "gleam_feed_conversion_ratios" ] }, { "page": "gleam_feed_digestibility", "title": "GLEAM feed digestibility for ruminants.", "topics": [ "gleam_feed_digestibility" ] }, { "page": "gleam_field_operation_ef", "title": "Emission factors for field operations on feed materials.", "topics": [ "gleam_field_operation_ef" ] }, { "page": "gleam_fracremove", "title": "Country-level fraction of crop residues removed.", "topics": [ "gleam_fracremove" ] }, { "page": "gleam_geographic_hierarchy", "title": "GLEAM geographic hierarchy.", "topics": [ "gleam_geographic_hierarchy" ] }, { "page": "gleam_livestock_categories", "title": "GLEAM livestock categories.", "topics": [ "gleam_livestock_categories" ] }, { "page": "gleam_mechanization_levels", "title": "Country-level mechanization levels for feed materials.", "topics": [ "gleam_mechanization_levels" ] }, { "page": "gleam_milk_production", "title": "GLEAM milk production.", "topics": [ "gleam_milk_production" ] }, { "page": "gleam_mms_shares", "title": "GLEAM manure management system shares.", "topics": [ "gleam_mms_shares" ] }, { "page": "gleam_processing_transport_ef", "title": "Processing and transport emission factors for feeds.", "topics": [ "gleam_processing_transport_ef" ] }, { "page": "grass_access_shares", "title": "Accessibility and conversion parameters for grazable grass availability.", "topics": [ "grass_access_shares" ] }, { "page": "grazing_energy_coefs", "title": "Grazing energy coefficients.", "topics": [ "grazing_energy_coefs" ] }, { "page": "gridded_fallow_weights", "title": "Build agro-climatic, rainfed-gated fallow allocation weights.", "topics": [ "gridded_fallow_weights" ] }, { "page": "harmonize_interpolate", "title": "Harmonize advanced cases with interpolation for 1:N groups", "topics": [ "harmonize_interpolate" ] }, { "page": "harmonize_simple", "title": "Harmonize rows labeled \"simple\" by summing values", "topics": [ "harmonize_simple" ] }, { "page": "indirect_n2o_ef", "title": "Indirect N2O emission factors.", "topics": [ "indirect_n2o_ef" ] }, { "page": "ipcc_2006_enteric_ef", "title": "IPCC 2006 Tier 1 enteric emission factors.", "topics": [ "ipcc_2006_enteric_ef" ] }, { "page": "ipcc_2006_manure_ef", "title": "IPCC 2006 Tier 1 manure emission factors.", "topics": [ "ipcc_2006_manure_ef" ] }, { "page": "ipcc_2006_mcf_temp", "title": "IPCC 2006 MCF by temperature.", "topics": [ "ipcc_2006_mcf_temp" ] }, { "page": "ipcc_2019_bo", "title": "IPCC 2019 Bo values (Table 10.16).", "topics": [ "ipcc_2019_bo" ] }, { "page": "ipcc_2019_cfi", "title": "IPCC 2019 Cfi values (Table 10.4).", "topics": [ "ipcc_2019_cfi" ] }, { "page": "ipcc_2019_enteric_ef_cattle", "title": "IPCC 2019 enteric EF for cattle.", "topics": [ "ipcc_2019_enteric_ef_cattle" ] }, { "page": "ipcc_2019_enteric_ef_other", "title": "IPCC 2019 enteric EF for non-cattle.", "topics": [ "ipcc_2019_enteric_ef_other" ] }, { "page": "ipcc_2019_manure_ch4_ef_cattle", "title": "IPCC 2019 manure CH4 EF for cattle.", "topics": [ "ipcc_2019_manure_ch4_ef_cattle" ] }, { "page": "ipcc_2019_manure_ch4_ef_other", "title": "IPCC 2019 manure CH4 EF for non-cattle.", "topics": [ "ipcc_2019_manure_ch4_ef_other" ] }, { "page": "ipcc_2019_mcf_manure", "title": "IPCC 2019 MCF for manure management.", "topics": [ "ipcc_2019_mcf_manure" ] }, { "page": "ipcc_2019_n_excretion", "title": "IPCC 2019 nitrogen excretion rates.", "topics": [ "ipcc_2019_n_excretion" ] }, { "page": "ipcc_2019_n2o_ef_direct", "title": "IPCC 2019 direct N2O emission factors.", "topics": [ "ipcc_2019_n2o_ef_direct" ] }, { "page": "ipcc_2019_ym", "title": "IPCC 2019 Ym values (Table 10.12).", "topics": [ "ipcc_2019_ym" ] }, { "page": "ipcc_tier2_bo_values", "title": "Tier 2 Bo values.", "topics": [ "ipcc_tier2_bo_values" ] }, { "page": "ipcc_tier2_energy_coefs", "title": "Tier 2 energy coefficients.", "topics": [ "ipcc_tier2_energy_coefs" ] }, { "page": "ipcc_tier2_manure_ash", "title": "Tier 2 manure ash content.", "topics": [ "ipcc_tier2_manure_ash" ] }, { "page": "ipcc_tier2_n_retention", "title": "Tier 2 nitrogen retention fractions.", "topics": [ "ipcc_tier2_n_retention" ] }, { "page": "ipcc_tier2_ym_values", "title": "Tier 2 Ym values.", "topics": [ "ipcc_tier2_ym_values" ] }, { "page": "items_cbs", "title": "Commodity balance sheet items", "topics": [ "items_cbs" ] }, { "page": "items_full", "title": "Full CBS item table", "topics": [ "items_full" ] }, { "page": "items_prim", "title": "Primary production items linked to CBS", "topics": [ "items_prim" ] }, { "page": "items_prod", "title": "Primary production items", "topics": [ "items_prod" ] }, { "page": "items_prod_full", "title": "Full production item table", "topics": [ "items_prod_full" ] }, { "page": "lassaletta_grassland_share", "title": "Grassland share of synthetic nitrogen by country and year", "topics": [ "lassaletta_grassland_share" ] }, { "page": "liv_lu_coefs", "title": "Livestock unit coefficients", "topics": [ "liv_lu_coefs" ] }, { "page": "livestock_constants", "title": "Livestock physical constants.", "topics": [ "livestock_constants" ] }, { "page": "livestock_production_defaults", "title": "Default production parameters.", "topics": [ "livestock_production_defaults" ] }, { "page": "make_lpjml_covariate", "title": "Build an LPJmL/WHEP spatial covariate function", "topics": [ "make_lpjml_covariate" ] }, { "page": "max_intake_share", "title": "Maximum intake shares.", "topics": [ "max_intake_share" ] }, { "page": "melt_bilateral_trade", "title": "Melt a bilateral trade matrix to long format.", "topics": [ "melt_bilateral_trade" ] }, { "page": "mueller_synthetic_n", "title": "Synthetic nitrogen application rates by crop and country", "topics": [ "mueller_synthetic_n" ] }, { "page": "plot_footprint_sankey", "title": "Interactive footprint Sankey viewer", "topics": [ "plot_footprint_sankey" ] }, { "page": "polities", "title": "Polities", "topics": [ "polities" ] }, { "page": "polities_cats", "title": "Polity categories and regional classifications", "topics": [ "polities_cats" ] }, { "page": "polity_area_crosswalk", "title": "FAOSTAT/FABIO area-to-polity crosswalk", "topics": [ "polity_area_crosswalk" ] }, { "page": "prepare_livestock_emissions", "title": "Prepare production data for livestock emission calculations.", "topics": [ "prepare_livestock_emissions" ] }, { "page": "primary_double", "title": "Items with double-counting in production statistics", "topics": [ "primary_double" ] }, { "page": "propagate_fp_uncertainty", "title": "Propagate input uncertainty through a footprint.", "topics": [ "propagate_fp_uncertainty" ] }, { "page": "read_lpjml_grass_productivity", "title": "Read natural-grass productivity from an LPJmL run.", "topics": [ "read_lpjml_grass_productivity" ] }, { "page": "record_provenance", "title": "Record provenance for a reproducible result.", "topics": [ "record_provenance" ] }, { "page": "redistribute_feed", "title": "Redistribute available feed supply among livestock demand.", "topics": [ "redistribute_feed" ] }, { "page": "regional_mms_distribution", "title": "Regional MMS distribution.", "topics": [ "regional_mms_distribution" ] }, { "page": "regions_full", "title": "Full polity and region reference table", "topics": [ "regions_full" ] }, { "page": "run_spatialize", "title": "Run the gridded land-use spatialization pipeline", "topics": [ "run_spatialize" ] }, { "page": "smil_2001_synthetic_n_global", "title": "Smil (2001) global synthetic nitrogen production, 1913-2000", "topics": [ "smil_2001_synthetic_n_global" ] }, { "page": "split_manure_management", "title": "Split livestock excretion across manure-management systems.", "topics": [ "split_manure_management" ] }, { "page": "summarise_conservation", "title": "Summarise a footprint conservation report.", "topics": [ "summarise_conservation" ] }, { "page": "summarize_bnf", "title": "Summarise biological nitrogen fixation results.", "topics": [ "summarize_bnf" ] }, { "page": "temperature_adjustment", "title": "Temperature adjustment factors for NEm.", "topics": [ "temperature_adjustment" ] }, { "page": "uncertainty_ranges", "title": "Uncertainty ranges for emission parameters.", "topics": [ "uncertainty_ranges" ] }, { "page": "whep_clear_cache", "title": "Clear the build pipeline cache", "topics": [ "whep_clear_cache" ] }, { "page": "whep_coef_table", "title": "Read a WHEP coefficient table.", "topics": [ "whep_coef_table" ] }, { "page": "whep_inputs", "title": "External inputs", "topics": [ "whep_inputs" ] }, { "page": "whep_list_file_versions", "title": "Input file versions", "topics": [ "whep_list_file_versions" ] }, { "page": "whep_read_file", "title": "Download, cache and read files", "topics": [ "whep_read_file" ] } ], "_pkglogo": "https://github.com/eduaguilera/whep/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/eduaguilera/whep/raw/HEAD/README.md", "_rundeps": [ "arrow", "askpass", "assertthat", "bit", "bit64", "class", "classInt", "cli", "clipr", "cpp11", "crayon", "curl", "data.table", "digest", "dplyr", "e1071", "FAOSTAT", "fs", "generics", "glue", "hms", "httr", "jsonlite", "KernSmooth", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "mime", "nanoparquet", "openssl", "pillar", "pins", "pkgconfig", "plyr", "prettyunits", "progress", "proxy", "purrr", "R6", "rappdirs", "Rcpp", "readr", "RJSONIO", "rlang", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "tzdb", "utf8", "vctrs", "vroom", "whisker", "withr", "yaml", "zoo" ], "_vignettes": [ { "source": "footprint-analysis.Rmd", "filename": "footprint-analysis.html", "title": "Environmental footprint analysis", "engine": "knitr::rmarkdown", "headings": [ "What is a footprint analysis?", "The three-step pipeline", "Concepts and terminology", "Supply-use tables and process groups", "Mixed units in the supply-use system", "Bilateral trade", "Commodity balance sheets (CBS)", "The Z matrix (inter-industry flows)", "Trade shares", "The Y matrix (final demand)", "The X vector (total output)", "FABIO adjustments", "The Leontief inverse (L)", "Environmental extensions", "The footprint", "Running the analysis", "Step 1: Build the IO model", "Step 2: Compute the Leontief inverse", "For large systems", "Step 3: Compute the footprint", "Dense path (pre-computed L, small systems)", "Using Z directly (large systems)", "With and without fd_labels", "Analysing the results", "A conservation check", "Processing multiple years", "Parallel execution (optional)", "Summary", "References" ], "created": "2026-06-08 14:18:05", "modified": "2026-06-24 14:57:01", "commits": 2 }, { "source": "trade-sources-coverage.Rmd", "filename": "trade-sources-coverage.html", "title": "Trade sources year coverage", "engine": "knitr::rmarkdown", "headings": [], "created": "2025-01-13 15:13:37", "modified": "2026-07-24 13:06:03", "commits": 4 } ], "_score": 5.903089986991944, "_indexed": true, "_nocasepkg": "whep", 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